dipy_mask

Synopsis

Workflow for creating a binary mask

Usage

dipy_mask [OPTIONS] input_files lb

Input Parameters

• input_files

  Path to image to be masked.

• lb

  Lower bound value.

General Options

• --ub

  Upper bound value. (default: inf)

Output Options

• --out_dir

  Output directory. (default: current directory)

• --out_mask

  Name of the masked file. (default: mask.nii.gz)

References

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.