proteinortho (6.3.1+dfsg-1build1) resolute; urgency=medium

  * No-change mass rebuild for Ubuntu 26.04 (LP: #2132257)

 -- Graham Inggs <ginggs@ubuntu.com>  Thu, 08 Jan 2026 20:18:07 +0000

proteinortho (6.3.1+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Clean up after testing
    Closes: #1046514

 -- Andreas Tille <tille@debian.org>  Fri, 12 Jan 2024 06:50:22 +0100

proteinortho (6.2.3+dfsg-1) unstable; urgency=medium

  * Team Upload.
  * New upstream version 6.2.3+dfsg
  * Drop ignore-warnings.patch
  * Update deb_diamond patch

 -- Nilesh Patra <nilesh@debian.org>  Mon, 12 Jun 2023 23:04:02 +0530

proteinortho (6.1.7+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)

 -- Andreas Tille <tille@debian.org>  Tue, 17 Jan 2023 16:24:44 +0100

proteinortho (6.1.4+dfsg-1) unstable; urgency=medium

  * Fix watch file
  * New upstream version

 -- Andreas Tille <tille@debian.org>  Sat, 26 Nov 2022 06:29:10 +0100

proteinortho (6.1.2+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Team Upload.
  * New upstream version 6.1.2+dfsg
  * Set upstream metadata fields: Bug-Database, Bug-Submit.

  [ Nilesh Patra ]
  * Do not run tests in parallel as the makefile (probably) does not
    yet support running on multiple threads
  * Update testing code (Thanks to upstream)

 -- Nilesh Patra <nilesh@debian.org>  Tue, 15 Nov 2022 17:46:25 +0530

proteinortho (6.1.1+dfsg-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <tille@debian.org>  Fri, 14 Oct 2022 22:07:24 +0200

proteinortho (6.1.0+dfsg-2) unstable; urgency=medium

  * autopkgtest: OMP_NUM_THREADS=1
  * Fix lintian-overrides
  * Deal with false positives from lintian
  * SALSA_CI_DISABLE_BUILD_PACKAGE_I386

 -- Andreas Tille <tille@debian.org>  Fri, 01 Jul 2022 12:21:18 +0200

proteinortho (6.1.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <tille@debian.org>  Thu, 30 Jun 2022 17:10:38 +0200

proteinortho (6.0.33+dfsg-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <tille@debian.org>  Mon, 24 Jan 2022 18:20:19 +0100

proteinortho (6.0.31+dfsg-3) unstable; urgency=medium

  * Add versioned B-D and Depends on diamond-aligner since
    --ignore-warnings option was not present in versions
    before 2.0.10

 -- Nilesh Patra <nilesh@debian.org>  Fri, 29 Oct 2021 12:10:53 +0530

proteinortho (6.0.31+dfsg-2) unstable; urgency=medium

  * Add patch to enable building with
    new diamond-aligner (Closes: #996407)
  * Run cme

 -- Nilesh Patra <nilesh@debian.org>  Fri, 29 Oct 2021 01:34:50 +0530

proteinortho (6.0.31+dfsg-1) unstable; urgency=medium

  * New upstream version 6.0.31+dfsg
  * Drop baseline.patch, march and mtune are
    not propagated by default now
  * Refresh d/p/deb_diamond

 -- Nilesh Patra <nilesh@debian.org>  Sun, 15 Aug 2021 17:36:16 +0530

proteinortho (6.0.28+dfsg-1) unstable; urgency=medium

  * New upstream version

 -- Nilesh Patra <npatra974@gmail.com>  Mon, 01 Feb 2021 15:55:28 +0530

proteinortho (6.0.27+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version

 -- Nilesh Patra <npatra974@gmail.com>  Tue, 12 Jan 2021 19:47:35 +0530

proteinortho (6.0.25+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.5.1 (routine-update)

 -- Nilesh Patra <npatra974@gmail.com>  Sun, 06 Dec 2020 20:06:31 +0530

proteinortho (6.0.24+dfsg-2) unstable; urgency=medium

  * Fix baseline violation
    Closes: #974850
  * No tab in license text (routine-update)
  * Lintian override for script-with-language-extension

 -- Andreas Tille <tille@debian.org>  Sun, 15 Nov 2020 20:15:41 +0100

proteinortho (6.0.24+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version 6.0.24+dfsg
  * Remove merged patches, refresh rest with new upstream release

 -- Nilesh Patra <npatra974@gmail.com>  Wed, 21 Oct 2020 01:06:33 +0530

proteinortho (6.0.23+dfsg-1) unstable; urgency=medium

  * Team upload.
  * Refresh patches.
  * New upstream version
  * debhelper-compat 13 (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 08 Oct 2020 16:12:20 +0200

proteinortho (6.0.16+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Python3 patch applied upstream, remove it

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 01 Jun 2020 15:51:54 +0200

proteinortho (6.0.15+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 04 Apr 2020 10:05:46 +0200

proteinortho (6.0.14+dfsg-1) unstable; urgency=medium

  * Team upload.
  * Install all binaries to /usr/bin/ upon the request of upstream.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 17 Feb 2020 14:29:14 +0100

proteinortho (6.0.13+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Steffen Moeller <moeller@debian.org>  Mon, 03 Feb 2020 00:24:13 +0100

proteinortho (6.0.12+dfsg-2) unstable; urgency=medium

  * Team upload.
  * patch: Use #!/usr/bin/python3 (fixes autopkgtests)
  * patch: Find the packaged version of the Diamond aligner in
    /usr/lib/debian-med/bin, which will help with backports
  * patch: Improve build hardening via CPPFLAGS & CFLAGS
  * Expanded autopkgtests, following `make test`
  * patch: fix a spelling typo

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 13 Jan 2020 13:12:59 +0100

proteinortho (6.0.12+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.4.1
  * debian/copyright: use spaces rather than tabs to start continuation
    lines.

 -- Steffen Moeller <moeller@debian.org>  Fri, 13 Dec 2019 00:17:49 +0100

proteinortho (6.0.8+dfsg-1) unstable; urgency=medium

  * New upstream version ported to Python3
  * debhelper-compat 12
  * Fix perl interpreter path

 -- Andreas Tille <tille@debian.org>  Wed, 25 Sep 2019 16:39:22 +0200

proteinortho (6.0.6+dfsg-1) unstable; urgency=medium

  [ Paul Klemm ]
  * New upstream version

  [ Andreas Tille ]
  * Fix watch file and Files-Excluded
  * debhelper 12
  * Standards-Version: 4.4.0
  * Build-Depends: s/liblapack3/liblapack-dev|libatlas-base-dev|liblapack.so/
  * Fix permissions
  * Provide unversioned Link to binary
  * Fix autopkgtest

 -- Andreas Tille <tille@debian.org>  Mon, 15 Jul 2019 16:31:25 +0200

proteinortho (5.16.b+dfsg-1) unstable; urgency=medium

  * d/watch: Also catch letters in version number
  * New upstream version

 -- Andreas Tille <tille@debian.org>  Tue, 08 Jan 2019 09:29:46 +0100

proteinortho (5.16+dfsg-2) unstable; urgency=medium

  * Fix Homepage
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.3.0

 -- Andreas Tille <tille@debian.org>  Tue, 08 Jan 2019 09:02:45 +0100

proteinortho (5.16+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.1.3
  * debhelper 11
  * d/rules: do not parse d/changelog

 -- Andreas Tille <tille@debian.org>  Wed, 21 Feb 2018 08:35:47 +0100

proteinortho (5.15+dfsg-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <tille@debian.org>  Mon, 29 Aug 2016 15:10:00 +0200

proteinortho (5.13+dfsg-1) unstable; urgency=medium

  * New upstream version (all patches applied upstream)
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Wed, 04 May 2016 14:55:07 +0200

proteinortho (5.12+dfsg-1) unstable; urgency=medium

  * new upstream version
  * make better use of uscan options
  * cme fix dpkg-control
  * Fix C-Syntax
  * Apply fix from upstream to enable building the package
  * Better hardening

 -- Andreas Tille <tille@debian.org>  Thu, 17 Mar 2016 20:40:53 +0100

proteinortho (5.11+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #804995)

 -- Andreas Tille <tille@debian.org>  Fri, 13 Nov 2015 11:18:29 +0100
