ReadIterator

All Superinterfaces:: Fragment, FragmentIterator, Read

public interface ReadIterator extends Read

Field Summary

Fields inherited from interface Read
aligned, all, fullyAligned, partiallyAligned, unaligned
Method Summary

Modifier and Type

Method

Description

boolean

nextRead()

Advance to first Read on initial invocation advance to next Read subsequently

Methods inherited from interface Fragment
getFragmentBases, getFragmentBases, getFragmentBases, getFragmentId, getFragmentQualities, getFragmentQualities, getFragmentQualities, isAligned, isPaired

Methods inherited from interface FragmentIterator
nextFragment

Methods inherited from interface Read
fragmentIsAligned, getNumFragments, getReadBases, getReadBases, getReadBases, getReadCategory, getReadGroup, getReadId, getReadName, getReadQualities, getReadQualities, getReadQualities

Method Details
- nextRead
  
  boolean nextRead() throws ErrorMsg
  
  Advance to first Read on initial invocation advance to next Read subsequently
  
  Returns:
  
  false if no more Reads are available.
  
  Throws:
  
  ErrorMsg - if more Reads should be available, but could not be accessed.